Index

_

__init__() (sloth.mmcif.common.BaseExporter method) (sloth.mmcif.common.BaseImporter method) (sloth.mmcif.common.BaseParser method) (sloth.mmcif.exporter.JSONExporter method) (sloth.mmcif.handler.MMCIFHandler method) (sloth.mmcif.importer.JSONImporter method) (sloth.mmcif.models.Category method) (sloth.mmcif.models.DataBlock method) (sloth.mmcif.models.Item method) (sloth.mmcif.models.LazyGemmiColumn method) (sloth.mmcif.models.LazyItemDict method) (sloth.mmcif.models.LazyKeyList method) (sloth.mmcif.models.LazyRowList method) (sloth.mmcif.models.MMCIFDataContainer method) (sloth.mmcif.models.Row method) (sloth.mmcif.parser.MMCIFParser method) (sloth.mmcif.plugins.FunctionPlugin method) (sloth.mmcif.plugins.PluginFactory method) (sloth.mmcif.plugins.PluginWrapper method) (sloth.mmcif.serializer.CacheManager method) (sloth.mmcif.serializer.DictionaryParser method) (sloth.mmcif.serializer.MappingGenerator method) (sloth.mmcif.serializer.OwnershipAnalyzer method) (sloth.mmcif.serializer.RelationshipConstraint method) (sloth.mmcif.serializer.RelationshipMetadata method) (sloth.mmcif.serializer.RelationshipResolver method) (sloth.mmcif.validator.ContainerValidator method) (sloth.mmcif.validator.DataBlockValidator method) (sloth.mmcif.validator.MMCIFValidator method) (sloth.mmcif.validator.SchemaValidator method) (sloth.mmcif.validator.ValidationError method) (sloth.mmcif.validator.ValidationReport method) (sloth.mmcif.validator.ValidatorPlugin method) (sloth.mmcif.writer.MMCIFWriter method)

A

add() (sloth.mmcif.validator.ValidationReport method) add_value() (sloth.mmcif.models.Item method)

against() (sloth.mmcif.validator.CategoryValidator method) all_issues (sloth.mmcif.validator.ValidationReport property) allowed_pairs() (in module sloth.mmcif.validator)

B

BaseExporter (class in sloth.mmcif.common) BaseImporter (class in sloth.mmcif.common) BaseParser (class in sloth.mmcif.common)

BaseWriter (class in sloth.mmcif.common) blocks (sloth.mmcif.models.MMCIFDataContainer property) BlockValidationWrapper (class in sloth.mmcif.validator) build_nested_structure() (sloth.mmcif.serializer.NestingBuilder method)

C

CacheManager (class in sloth.mmcif.serializer) categories (sloth.mmcif.models.DataBlock property) Category (class in sloth.mmcif.models) CategoryValidator (class in sloth.mmcif.validator) clear_global_caches() (sloth.mmcif.serializer.CacheManager static method) composite_key() (in module sloth.mmcif.validator) conditional_mandatory() (in module sloth.mmcif.validator) ContainerValidationWrapper (class in sloth.mmcif.validator)

ContainerValidator (class in sloth.mmcif.validator) count() (sloth.mmcif.models.LazyKeyList method) create_wrapper() (sloth.mmcif.plugins.FunctionPlugin method) (sloth.mmcif.plugins.Plugin method) (sloth.mmcif.validator.ContainerValidator method) (sloth.mmcif.validator.DataBlockValidator method) (sloth.mmcif.validator.ValidatorPlugin method) cross_mandatory() (in module sloth.mmcif.validator) cross_ordering() (in module sloth.mmcif.validator)

D

data (sloth.mmcif.models.Category property) (sloth.mmcif.models.DataBlock property) (sloth.mmcif.models.MMCIFDataContainer property) (sloth.mmcif.models.Row property) DataBlock (class in sloth.mmcif.models) DataBlockValidator (class in sloth.mmcif.validator) DataContainer (class in sloth.mmcif.models)

DataNode (class in sloth.mmcif.models) DataSourceFormat (class in sloth.mmcif.models) delete() (sloth.mmcif.models.Category method) (sloth.mmcif.models.DataBlock method) (sloth.mmcif.models.MMCIFDataContainer method) DICT (sloth.mmcif.models.DataSourceFormat attribute) DictionaryParser (class in sloth.mmcif.serializer)

E

enumeration_check() (in module sloth.mmcif.validator) ERROR (sloth.mmcif.validator.ValidationSeverity attribute) errors (sloth.mmcif.validator.ValidationReport property) execute() (sloth.mmcif.plugins.FunctionPlugin method) (sloth.mmcif.plugins.Plugin method) (sloth.mmcif.validator.ContainerValidator method) (sloth.mmcif.validator.DataBlockValidator method) (sloth.mmcif.validator.ValidatorPlugin method)

export() (sloth.mmcif.handler.MMCIFHandler method) export_data() (sloth.mmcif.common.BaseExporter method) (sloth.mmcif.exporter.JSONExporter method) extend() (sloth.mmcif.validator.ValidationReport method)

F

filter_ownership_relationships() (sloth.mmcif.serializer.OwnershipAnalyzer method)

foreign_key() (in module sloth.mmcif.validator) FunctionPlugin (class in sloth.mmcif.plugins)

G

get() (sloth.mmcif.models.LazyItemDict method) (sloth.mmcif.serializer.CacheManager method) get_cache_manager() (in module sloth.mmcif.serializer) get_cross_checkers() (sloth.mmcif.validator.ValidatorPlugin method)

get_item() (sloth.mmcif.models.Category method) get_mapping_rules() (sloth.mmcif.serializer.MappingGenerator method) get_plugin() (sloth.mmcif.plugins.PluginFactory method) get_validators() (sloth.mmcif.validator.ValidatorPlugin method) get_wrapper() (sloth.mmcif.plugins.PluginFactory method)

H

has_plugin() (sloth.mmcif.plugins.PluginFactory method)

I

import_data() (sloth.mmcif.common.BaseImporter method) (sloth.mmcif.importer.JSONImporter method) index() (sloth.mmcif.models.LazyKeyList method) INFO (sloth.mmcif.validator.ValidationSeverity attribute) is_lazy_loaded() (sloth.mmcif.models.Category method)

is_valid (sloth.mmcif.validator.BlockValidationWrapper property) (sloth.mmcif.validator.ContainerValidationWrapper property) (sloth.mmcif.validator.ValidationReport property) Item (class in sloth.mmcif.models) items (sloth.mmcif.models.Category property) items() (sloth.mmcif.models.LazyItemDict method)

J

JSON (sloth.mmcif.models.DataSourceFormat attribute)

JSONExporter (class in sloth.mmcif.exporter) JSONImporter (class in sloth.mmcif.importer)

K

keys() (sloth.mmcif.models.LazyItemDict method)

L

LazyGemmiColumn (class in sloth.mmcif.models) LazyItemDict (class in sloth.mmcif.models) LazyKeyList (class in sloth.mmcif.models)

LazyRowList (class in sloth.mmcif.models) list_plugins() (sloth.mmcif.plugins.PluginFactory method) load() (sloth.mmcif.handler.MMCIFHandler method)

M

mandatory_items() (in module sloth.mmcif.validator) mapping_rules (sloth.mmcif.serializer.RelationshipResolver property) MappingGenerator (class in sloth.mmcif.serializer) merge() (sloth.mmcif.validator.ValidatorPlugin method) min_rows() (in module sloth.mmcif.validator) MMCIF (sloth.mmcif.models.DataSourceFormat attribute) MMCIFDataContainer (class in sloth.mmcif.models) MMCIFHandler (class in sloth.mmcif.handler) MMCIFParser (class in sloth.mmcif.parser) MMCIFValidator (class in sloth.mmcif.validator) MMCIFWriter (class in sloth.mmcif.writer)

module sloth.mmcif.common sloth.mmcif.exporter sloth.mmcif.handler sloth.mmcif.importer sloth.mmcif.models sloth.mmcif.parser sloth.mmcif.plugins sloth.mmcif.serializer sloth.mmcif.validator sloth.mmcif.writer

N

name (sloth.mmcif.models.Category property) (sloth.mmcif.models.DataBlock property) (sloth.mmcif.models.DataNode property) (sloth.mmcif.models.Item property) (sloth.mmcif.models.MMCIFDataContainer property) (sloth.mmcif.models.Row property)

NestingBuilder (class in sloth.mmcif.serializer)

O

one_of_following() (in module sloth.mmcif.validator) oper_expression() (in module sloth.mmcif.validator)

ordering_check() (in module sloth.mmcif.validator) OwnershipAnalyzer (class in sloth.mmcif.serializer)

P

parent_child() (in module sloth.mmcif.validator) parse() (sloth.mmcif.common.BaseParser method) (sloth.mmcif.parser.MMCIFParser method) (sloth.mmcif.serializer.DictionaryParser method)

Plugin (class in sloth.mmcif.plugins) PluginFactory (class in sloth.mmcif.plugins) PluginWrapper (class in sloth.mmcif.plugins)

R

raise_on_error() (sloth.mmcif.validator.ValidationReport method) read() (sloth.mmcif.handler.MMCIFHandler method) regex_check() (in module sloth.mmcif.validator) register() (sloth.mmcif.models.DataContainer method) (sloth.mmcif.plugins.PluginFactory method) register_cross_checker() (sloth.mmcif.validator.ValidatorPlugin method) register_validator() (sloth.mmcif.validator.ValidatorPlugin method) RelationshipConstraint (class in sloth.mmcif.serializer)

RelationshipMetadata (class in sloth.mmcif.serializer) RelationshipResolver (class in sloth.mmcif.serializer) report (sloth.mmcif.validator.BlockValidationWrapper property) (sloth.mmcif.validator.ContainerValidationWrapper property) resolve_relationships() (sloth.mmcif.serializer.RelationshipResolver method) result (sloth.mmcif.plugins.PluginWrapper property) Row (class in sloth.mmcif.models) row_count (sloth.mmcif.models.Category property) rows (sloth.mmcif.models.Category property)

S

SchemaValidator (class in sloth.mmcif.validator) set() (sloth.mmcif.serializer.CacheManager method) set_denormalize() (sloth.mmcif.serializer.RelationshipResolver method) sloth.mmcif.common module sloth.mmcif.exporter module sloth.mmcif.handler module sloth.mmcif.importer module

sloth.mmcif.models module sloth.mmcif.parser module sloth.mmcif.plugins module sloth.mmcif.serializer module sloth.mmcif.validator module sloth.mmcif.writer module

T

type_check() (in module sloth.mmcif.validator)

U

UNKNOWN (sloth.mmcif.models.DataSourceFormat attribute)

V

validate() (sloth.mmcif.serializer.RelationshipConstraint method) (sloth.mmcif.validator.ValidatorPlugin method) ValidationError (class in sloth.mmcif.validator) ValidationReport (class in sloth.mmcif.validator) ValidationSeverity (class in sloth.mmcif.validator)

ValidatorPlugin (class in sloth.mmcif.validator) value_length() (in module sloth.mmcif.validator) value_range() (in module sloth.mmcif.validator) values (sloth.mmcif.models.Item property) values() (sloth.mmcif.models.LazyItemDict method)

W

WARNING (sloth.mmcif.validator.ValidationSeverity attribute) warnings (sloth.mmcif.validator.ValidationReport property)

write() (sloth.mmcif.common.BaseWriter method) (sloth.mmcif.handler.MMCIFHandler method) (sloth.mmcif.writer.MMCIFWriter method)